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	<title>the bunsen boerner</title>
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		<title>Big girls don&#8217;t cry</title>
		<link>http://ljkboerner.wordpress.com/2011/11/17/big-girls-dont-cry/</link>
		<comments>http://ljkboerner.wordpress.com/2011/11/17/big-girls-dont-cry/#comments</comments>
		<pubDate>Thu, 17 Nov 2011 13:10:11 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[chemistry]]></category>
		<category><![CDATA[gasses]]></category>
		<category><![CDATA[tear gas]]></category>
		<category><![CDATA[acid]]></category>
		<category><![CDATA[Coke]]></category>
		<category><![CDATA[CS]]></category>
		<category><![CDATA[don't get teargassed]]></category>
		<category><![CDATA[dye packs]]></category>
		<category><![CDATA[Leigh's sordid past]]></category>
		<category><![CDATA[o-chlorobenzylidene malononitrile]]></category>
		<category><![CDATA[Occupy Wall Street protests]]></category>
		<category><![CDATA[tear gas structure]]></category>

		<guid isPermaLink="false">http://ljkboerner.wordpress.com/?p=324</guid>
		<description><![CDATA[Nope. Instead they hack, retch, and struggle to breathe. Or pour Coke on their face? Tear gas was a hot news topic back in February or so, when protestors in Egypt where getting hosed down with the stuff. It&#8217;s coming back up now, since police around the country are using it to clear out Occupy [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=324&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Nope. Instead they hack, retch, and struggle to breathe. Or pour Coke on their face?</p>
<p>Tear gas was a hot news topic back in February or so, when <a href="http://en.wikipedia.org/wiki/2011_Egyptian_revolution">protestors in Egypt where getting hosed down with the stuff</a>. It&#8217;s coming back up now, since police around the country are using it to clear out <a href="https://www.google.com/search?q=occupy+wall+street+tear+gas&amp;ie=utf-8&amp;oe=utf-8&amp;aq=t&amp;rls=org.mozilla:en-US:official&amp;client=firefox-a#q=occupy+wall+street+tear+gas&amp;hl=en&amp;client=firefox-a&amp;hs=a4r&amp;rls=org.mozilla:en-US:official&amp;prmd=imvnsu&amp;source=univ&amp;tbm=nws&amp;tbo=u&amp;sa=X&amp;ei=I2fETsXULfLH0AH-4O2MDw&amp;ved=0CDQQqAI&amp;bav=on.2,or.r_gc.r_pw.r_cp.,cf.osb&amp;fp=3fd088ed143aa031&amp;biw=1280&amp;bih=634">Occupy Wall Street</a> camps and such.</p>
<p>And so with this surge back to the forefront of the news is the popping up again of urban myths surrounding tear gas. The one I&#8217;m talking about in particular is that acid (eg vinegar, <a href="http://www.slate.com/articles/news_and_politics/explainer/2011/02/numb_and_coke.html">Coke</a>, etc.) can protect a person from the effects of tear gas. But before we get into if that actually works, we need to first define what tear gas is.</p>
<p>There are a fair few of <a href="http://www.thefreedictionary.com/lachrymator">lachrymators </a>out there. The most common are <a href="http://en.wikipedia.org/wiki/CS_gas">CS</a>, <a href="http://en.wikipedia.org/wiki/CN_gas">CN</a> (aka Mace), <a href="http://en.wikipedia.org/wiki/Diphenylaminearsine">DM</a>, <a href="http://en.wikipedia.org/wiki/CR_gas">CR</a>, and <a href="http://en.wikipedia.org/wiki/Bromobenzylcyanide">CA</a>. Aren&#8217;t those names helpful? Most are called after the initials of the inventors. CS, synthesized in 1928 by Corson and Stoughton, is what is usually called tear gas and is most commonly used in the US (according to this book chapter about riot control agents, <a href="http://www.au.af.mil/au/awc/awcgate/medaspec/Ch-12electrv699.pdf">pdf</a>). The chemical name is <em>o</em>-chlorobenzylidene malononitrile and it looks like so:</p>
<div id="attachment_555" class="wp-caption aligncenter" style="width: 310px"><a href="http://ljkboerner.files.wordpress.com/2011/11/cs.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/11/cs.jpg?w=300&#038;h=225" alt="" title="Mah drawring of CS, aka o-chlorobenzylidene malononitrile, aka 2-chlorobenzalmalononitrile, aka tear gas" width="300" height="225" class="size-medium wp-image-555" /></a><p class="wp-caption-text">The structure of CS. I think I&#039;ve given up on ChemDraw.</p></div>
<p>Okay, so what do we have here? We&#8217;ve got a benzene ring, a carbon-carbon double bond, two cyano groups, and a choloro group. According to <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2550352/pdf/bmj00603-0008.pdf">this article</a> (pdf), tear gas works by reacting with the water in our mucous membranes&#8211;that is eyes, nose, throat. The choloro group is the culprit here. It combines with water to make hydrochloric acid (HCl), which as you might imagine, is quite the party pooper. [ETA: CRAP! This is actually not right, as was pointed out by an astute commenter. I will update soon with the actual mechanism. Sorry about that.]</p>
<p>So would adding a mild acid to your face keep the stronger acid from forming? Well, Coke has phosphoric acid in it, which is a strong acid. Vinegar is a weak acid. Water is an even weaker acid. Of all those, phosphoric is the most likely to donate an H<sup>+</sup> over to the choloro. But, in water (such as your eyes), hydrochloric acid falls apart to make H<sup>+</sup> and Cl<sup>-</sup> anyway. So is pouring acid into your eyes really going to help you? Not sure about that.<div id="attachment_565" class="wp-caption alignright" style="width: 250px"><a href="http://ljkboerner.files.wordpress.com/2011/11/coke-can.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/11/coke-can.jpg?w=490" alt="" title="coke can by flickr user MrB-MMX"   class="size-full wp-image-565" /></a><p class="wp-caption-text">Coke is it?</p></div></p>
<p>I suppose that it could have the same protective as sunscreen. That is, give the sun something to break down on your skin other than, well, your skin. But I think that dousing your face with a can of Coke is not the best way to go here. It probably won&#8217;t do too much, except attract bees. (Amirite, chemists? Weigh in here.) I think a bandana soaked in some acidic substance and draped over the face may work better. Sure you won&#8217;t be able to see, but if you&#8217;re teargassed you won&#8217;t be able to see where the heck you&#8217;re going either, because of the tears. Alternatively, according to the paper I cited above, drying out the eyes after you&#8217;ve been teargassed is the best way to make it go away fast. Hear that OWSers? Make sure to keep your hair dryers with you at all times.</p>
<p>Also noted in the book chapter about riot control agents is that animals are not so susceptible to the aerosol effects of tear gas, because they are covered in fur. So, best defense against tear gas: turn into a bear. Then the bees probably won&#8217;t bother you anyway.</p>
<p>Oh, for those of you getting hyper about those cyano groups up in the CS structure, they aren&#8217;t particularly harmful. Quoth the riot control agents chapter:</p>
<p>&#8220;If one were to absorb completely all the CS during a 1-minute exposure at 10 mg/m<sup>3</sup>, and if both cyanides on the molecule were liberated — and evidence suggests that only one is liberated — the<br />
total amount of cyanide received would be equivalent to that received from two puffs of a cigarette.&#8221;</p>
<p>I think the big picture here is that you shouldn&#8217;t smoke.</p>
<p>No seriously, you really want to avoid tear gas if possible. Yes, you can imagine that it sounds nasty and all, but I&#8217;m telling you it really really sucks. I should know, as I&#8217;ve been tear gassed three times.</p>
<p>I should say in my defense that in two cases I was an innocent bystander. The third was from malfunction of safety equipment. Um. Sure, that&#8217;s what I&#8217;ll call it.</p>
<p>The first time was at a Grateful Dead concert. (Hey. Don&#8217;t judge me.) Some geniuses decided to jump the back gate at Deer Creek, the police came and set off tear gas canisters, and I happened to be on the wrong side of the wind at the wrong time. Really, I was in the parking lot, I wasn&#8217;t even at the show. The most horrible thing about that is there was a woman next to me holding a baby that was <em>maybe </em>6 months old. Hearing a baby choke on tear gas is something I don&#8217;t ever want to repeat. Ever. Being teargassed feels like you are breathing needles. Fortunately, I only got a very light dose that time.</p>
<p>The second time was only marginally my fault. I was working at a bank, as a teller. Do you know that in all cash drawers is a pack of $20s, sometimes real, sometimes fake, that you&#8217;re supposed to hand over if you get robbed? It&#8217;s called a bait pack. In some cases, all the serial numbers are recorded so the bills can be traced. But in other cases, such as this particular bank, the bait pack consists of a rectangular packet of dye and sensor, sandwiched between two $20 bills, called a <a href="http://www.howstuffworks.com/question671.htm">dye pack</a>. The dye sensor, I was told, is ONLY SUPPOSED TO GO OFF WHEN IT GOES PAST THE OUTSIDE DOORS. This is important.</p>
<p><div id="attachment_567" class="wp-caption alignleft" style="width: 250px"><a href="http://ljkboerner.files.wordpress.com/2011/11/dye-pack.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/11/dye-pack.jpg?w=490" alt="" title="Easy money, by flickr user accent on eclectic"   class="size-full wp-image-567" /></a><p class="wp-caption-text">An exploded dye pack. Yep, it really looks like this.</p></div>I had just started working there, and was talking to the manager about something at my window, training type stuff. She mentioned the dye pack, and me being me said, &#8220;Wow, that&#8217;s cool. Can I see it?&#8221; Sure, she said, so she deactivated the police alarm on the drawer (the bait pack is in a special slot attached to a silent alarm, at least it was at this bank), pulled out the dye pack, and handed it over. I gently lifted up one of the $20s to look underneath, and the thing started making popping noises at me. The manager yelled, &#8220;Aaaaah!! Get rid of it, get rid of it!&#8221; So I chucked it under my desk and we both bolted for the back room. She slammed the door and we watched, with the other tellers, as a giant magenta plume filled the two story marble lobby. And the funny thing? It wasn&#8217;t just dye, there was tear gas in there as well.</p>
<p>Fortunately, it was about five minutes to five so there weren&#8217;t any customers in the lobby. Unfortunately, my dad also worked at the bank (vice president of something, which is how I go the job, yay nepotism), and it was kind of a small bank. Word traveled fast. Approximately three minutes after the dye pack went off, the phone rang on the teller line. &#8220;So,&#8221; my dad said, &#8220;I hear you tear gassed the whole lobby.&#8221;</p>
<p>The worst part was that we all had to walk through the lobby to get out, which meant also through the tear gas. I put my sweater over my face and ran for where I vaguely remembered the door to be. Amazingly I didn&#8217;t crash into anything, but got a HUGE dose of the tear gas. I had to wash my clothes three times to get rid of all traces. </p>
<p>The last time was after <a href="http://www.bloomingpedia.org/wiki/Knight_Riots">Bobby Knight got fired from IU</a>. Again, wrong place wrong time for me. I was downtown with a friend, there was a kerfuffle going on, and for some reason she wanted to see what was going on. We walked a block towards the noise, then I saw the cops and caught a whiff of what was now a familiar smell, so I grabbed her arm and dragged her the hell out of there. Our lips and eyes burned a bit, but that was all really. Narrow escape.</p>
<p>Big big take home message: don&#8217;t get teargassed, even if you do get amusing stories out of it. I intend to avoid it from now on.</p>
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		<slash:comments>4</slash:comments>
	
		<media:content url="http://0.gravatar.com/avatar/4fd588c5d83d668ac605e25e976617cd?s=96&#38;d=monsterid&#38;r=G" medium="image">
			<media:title type="html">Leigh Krietsch Boerner</media:title>
		</media:content>

		<media:content url="http://ljkboerner.files.wordpress.com/2011/11/cs.jpg?w=300" medium="image">
			<media:title type="html">Mah drawring of CS, aka o-chlorobenzylidene malononitrile, aka 2-chlorobenzalmalononitrile, aka tear gas</media:title>
		</media:content>

		<media:content url="http://ljkboerner.files.wordpress.com/2011/11/coke-can.jpg" medium="image">
			<media:title type="html">coke can by flickr user MrB-MMX</media:title>
		</media:content>

		<media:content url="http://ljkboerner.files.wordpress.com/2011/11/dye-pack.jpg" medium="image">
			<media:title type="html">Easy money, by flickr user accent on eclectic</media:title>
		</media:content>
	</item>
		<item>
		<title>That chair thing</title>
		<link>http://ljkboerner.wordpress.com/2011/09/02/that-chair-thing/</link>
		<comments>http://ljkboerner.wordpress.com/2011/09/02/that-chair-thing/#comments</comments>
		<pubDate>Fri, 02 Sep 2011 14:57:10 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[chemistry]]></category>
		<category><![CDATA[goofiness]]></category>
		<category><![CDATA[chair conformation]]></category>
		<category><![CDATA[cyclohexane]]></category>
		<category><![CDATA[hand-drawn structures]]></category>
		<category><![CDATA[I should have TA'd organic]]></category>
		<category><![CDATA[random crap]]></category>

		<guid isPermaLink="false">http://ljkboerner.wordpress.com/?p=528</guid>
		<description><![CDATA[This is Chemjobber&#8217;s fault. And Carmen Drahl&#8217;s and UnstableIsotope&#8217;s too. See, Carmen is collecting hand drawn propofol structures over at her blog. (I didn&#8217;t draw those yet, but I might.) But then UnstableIsotope said we should do chair conformation too, and I can&#8217;t resist a good chair conformation. And then Chemjobber put his up on [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=528&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>This is Chemjobber&#8217;s fault. </p>
<p>And Carmen Drahl&#8217;s and UnstableIsotope&#8217;s too. See, Carmen is collecting <a href="http://cenblog.org/newscripts/2011/09/in-hand-drawn-structures-a-piece-of-personality/">hand drawn propofol structures over at her blog</a>. (I didn&#8217;t draw those yet, but I might.) But then UnstableIsotope said we should do chair conformation too, and I can&#8217;t resist a good chair conformation. And then <a href="http://chemjobber.blogspot.com/2011/09/not-trend-i-promise-but.html">Chemjobber put his up on his blog</a> so then I was really spurred to action. Here&#8217;s mine. (And yes, it was the first try.)</p>
<p><a href="http://ljkboerner.files.wordpress.com/2011/09/chair.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/09/chair.jpg?w=300&#038;h=224" alt="" title="chair" width="300" height="224" class="aligncenter size-medium wp-image-529" /></a></p>
<p>Forgive the different C-H bond lengths there. I&#8217;m at the public library, and all I could find to write with was one of those tiny library/golf pencils that don&#8217;t have erasers. This one almost didn&#8217;t have a point. I guess I need to refill my bag with writing implements. </p>
<p>I other news, I&#8217;m slowly recovering from defending my thesis earlier this month. I&#8217;m working as a full-time freelance science writer now. And I hope to get back to blogging as soon as I can get some kind of reliable internet access installed at my house. That&#8217;s why I&#8217;m at the public library, by the way. The wireless keeps going in and out and there&#8217;s a really old guy who keeps hacking into a handkerchief right next to me. It&#8217;s awesome. I guess I should be glad that he at least is using a handkerchief.</p>
<p>Anyway, revel in my lovely chair confirmation. And I hope to be back soon.</p>
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		<slash:comments>3</slash:comments>
	
		<media:content url="http://0.gravatar.com/avatar/4fd588c5d83d668ac605e25e976617cd?s=96&#38;d=monsterid&#38;r=G" medium="image">
			<media:title type="html">Leigh Krietsch Boerner</media:title>
		</media:content>

		<media:content url="http://ljkboerner.files.wordpress.com/2011/09/chair.jpg?w=300" medium="image">
			<media:title type="html">chair</media:title>
		</media:content>
	</item>
		<item>
		<title>The &#8216;O&#8217; word</title>
		<link>http://ljkboerner.wordpress.com/2011/07/21/the-o-word/</link>
		<comments>http://ljkboerner.wordpress.com/2011/07/21/the-o-word/#comments</comments>
		<pubDate>Thu, 21 Jul 2011 12:46:33 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[agriculture]]></category>
		<category><![CDATA[biology]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[environment]]></category>
		<category><![CDATA[CHEMisperceptions]]></category>
		<category><![CDATA[gardening]]></category>
		<category><![CDATA[organic]]></category>
		<category><![CDATA[organic chemistry]]></category>
		<category><![CDATA[organic gardening]]></category>
		<category><![CDATA[Rodale]]></category>
		<category><![CDATA[word usage]]></category>

		<guid isPermaLink="false">http://ljkboerner.wordpress.com/?p=473</guid>
		<description><![CDATA[For those of you that didn&#8217;t get here from there, this post is the last in the series of CHEMisperceptions bloggy roundtable. Please read the other entries at ScienceGeist, Chemjobber, and ChemBark for your own enlightenment and entertainment. Organic. What the hell does that word mean? As with many things in life, the answer depends [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=473&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><em>For those of you that didn&#8217;t get here from there, this post is the last in the series of CHEMisperceptions bloggy roundtable. Please read the other entries at <a href="http://sciencegeist.net/chemisperceptions-day-1/">ScienceGeist</a>, <a href="http://chemjobber.blogspot.com/2011/07/chemisperceptions-missing-how-of.html">Chemjobber</a>, and <a href="http://blog.chembark.com/2011/07/20/corny-energy-policy/">ChemBark </a>for your own enlightenment and entertainment. </em></p>
<p>Organic. What the hell does that word mean?</p>
<p>As with many things in life, the answer depends on who you are. Are you a chemist? (I am!) Then organic makes you think benzene, hexane, methane—almost any chemical compound that contains a carbon atom. Perhaps you’re a gardener. (Again, me.) Then organic means a way of tending your plants, using bat poo and insecticidal soap instead of Miracle-Gro and Roundup.  Are you a writer of dictionaries? Then organic might mean something like this to you…</p>
<blockquote><p>“of, relating to, or derived from living matter.”</p></blockquote>
<p><a href="http://ljkboerner.files.wordpress.com/2011/07/chipmunk-by-dawn-huczek.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/07/chipmunk-by-dawn-huczek.jpg?w=490" alt="" title="an organic chipmunk digging some organic vittles"   class="alignleft size-full wp-image-504" /></a>So twigs, leaves, chipmunk carcasses, eyeballs, your wool socks, cat whiskers, whatever, all organic materials.  Things that are not organic: Rocks. Metal. Whatever beats in Rupurt Murdoch’s chest. These things are known as inorganic, the opposite of organic. In the chemical sense, they (mostly) do not contain carbon. Some very familiar inorganic substances are water (H<sub>2</sub>O) and salt, table or other. (Table salt is sodium chloride, NaCl. The salt they put on the roads in winter is usually potassium chloride, or KCl. There are also numerous other salts that don’t contain chloride ions.)</p>
<p>By the way? That organic = natural definition is the oldest one. So if we want to be purists about it, that’s what organic really means.</p>
<p>However, in colloquial language terms, we are not purists. As such, organic means whatever we say it means. So what do we say it means? To most people, when they hear the word organic they think produce. The Farmer’s Market on Saturday mornings. The first thought of organic is in the farming sense. And that actually, is something very specific.</p>
<p><a href="http://ljkboerner.files.wordpress.com/2011/07/130px-usda_organic_seal-svg.png"><img src="http://ljkboerner.files.wordpress.com/2011/07/130px-usda_organic_seal-svg.png?w=490" alt="" title="130px-USDA_organic_seal.svg"   class="alignleft size-full wp-image-512" /></a>According to the <a href="http://www.ams.usda.gov/AMSv1.0/ams.fetchTemplateData.do?template=TemplateA&amp;navID=NationalOrganicProgram&amp;page=NOPNationalOrganicProgramHome&amp;resultType=&amp;topNav=null&amp;leftNav=NationalOrganicProgram&amp;acct=nop">USDA</a>, if you’re a farmer or a food-seller, you have to meet very specific guidelines to call your food or product or whatever ‘organic.’ And they are thus:</p>
<p>“Organic crops are raised without using most conventional pesticides, petroleum-based fertilizers, or sewage sludge-based fertilizers. Animals raised on an organic operation must be fed organic feed and given access to the outdoors. They are given no antibiotics or growth hormones.</p>
<p>The National Organic Program (NOP) regulations prohibit the use of genetic engineering, ionizing radiation, and sewage sludge in organic production and handling. As a general rule, all natural (non-synthetic) substances are allowed in organic production and all synthetic substances are prohibited. <a href="http://www.ams.usda.gov/AMSv1.0/ams.fetchTemplateData.do?template=TemplateJ&amp;navID=NationalOrganicProgram&amp;leftNav=NationalOrganicProgram&amp;page=NOPPetitionedSubstancesDatabase&amp;description=Petitioned%20Substances%20Database&amp;acct=nopgeninfo">The National List of Allowed Synthetic and Prohibited Non-Synthetic Substances</a>, a section in the regulations, contains the specific exceptions to the rule.”</p>
<p>I think that last line is the most important there. That list? Is huuuuge. And some of the things on it are surprising (such as <a href="http://www.vivo.colostate.edu/hbooks/pathphys/endocrine/hypopit/oxytocin.html">oxytocin</a>). However, the point is that organic doesn’t necessarily mean natural, or non-synthetic. (The USDA even says so <a href="http://www.ams.usda.gov/AMSv1.0/ams.fetchTemplateData.do?template=TemplateA&amp;leftNav=NationalOrganicProgram&amp;page=NOPUnderstandingOrganic&amp;description=Understanding%20Organic&amp;acct=nopgeninfo">right here</a>.) </p>
<p>So the general public somehow seems to have combined the older definition (organic = natural) with the farming definition (organic = non-synthetic, except for when it doesn’t). Because the general zeitgeist does seem to be that organic somehow means better for you. It does not. However, I’m not going to go into that here. It’s a complex and fascinating topic, and I highly suggest Christine Wilcox’s excellent post about the myths of organic <a href="http://blogs.scientificamerican.com/science-sushi/2011/07/18/mythbusting-101-organic-farming-conventional-agriculture/">here</a>.</p>
<p>In this context, I’m more interested in where the term ‘organic farming’ came from. And the biggest name in organic farming is certainly <a href="http://www.rodaleinstitute.org/">Rodale</a>. The Rodale Institute was started in 1947 by J.I.Rodale. The Rodale Institute publishes a lot of books on organic farming practices, as well as runs a series of farming trials <a href="http://www.rodaleinstitute.org/fst">comparing organic farming practices to conventional ones.</a></p>
<p><a href="http://ljkboerner.files.wordpress.com/2011/07/tomatoes.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/07/tomatoes.jpg?w=199&#038;h=300" alt="" title="tomatoes in mah garden" width="199" height="300" class="alignright size-medium wp-image-509" /></a></p>
<p>Rodale is considered by many to be the father of the organic farming movement. These ideas did not come from nowhere into his head, however; he was highly influenced by Sir Albert Howard&#8217;s <em>An Agricultural Testament</em>, published in 1940. (<a href="http://www.zetatalk3.com/docs/Agriculture/An_Agricultural_Testament_1943.pdf">Here is a pdf of the whole thing</a>, if you&#8217;re interested.) <a href="http://en.wikipedia.org/wiki/Lady_Eve_Balfour">Lady Eve Balfour</a> also wrote upon the subject in 1943, in a book called <em>The Living Soil</em> (but that one&#8217;s out of print).</p>
<p>Regardless, no one&#8217;s really sure who coined the term &#8216;organic farming.&#8217; However, it was a term used to differentiate between conventional farming techniques that used many inorganic salts as fertilizers. The big deal with Howard and Balfour and Rodale was the use of manure to add organic matter back into the soil. The use of inorganic salts on cropland will, over time, kill the millions of organisms that live in dirt, leading to ‘dead’ or inorganic dirt. You want your dirt to be alive to have healthy plants. Hence, ‘organic’ farming. It actually makes sense if you think about it.</p>
<p><a href="http://ljkboerner.files.wordpress.com/2011/07/organic-cat-by-ragesoss.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/07/organic-cat-by-ragesoss.jpg?w=490" alt="" title="organic cat by ragesoss"   class="alignleft size-full wp-image-508" /></a>So, I imagine that all the chemists reading this are gnashing their teeth about now. Because in chemistry terms, ALL farming is organic farming. Remember, organic to a chemist means containing carbon, and you&#8217;d be pretty dang hard pressed to find a plant without carbon in it.</p>
<p><em>Supposedly</em>, the term &#8216;organic chemistry&#8217; came about in 1807, named by Jöns Jacob Berzelius for compounds that were derived from living things. (I say supposedly because I can only find one source that says that, <a href="http://en.wikibooks.org/wiki/Organic_Chemistry/Foundational_concepts_of_organic_chemistry/History_of_organic_chemistry">Wikipedia</a>.) So it does outdate the use of organic for farming. But that means chemists win? Do we own the term ‘organic’?</p>
<p>So that’s the question I’m throwing out to you reader-types out there. Should organic farming be called something else? Or should we just all get along, and share the word?</p>
<p>Here’s my $0.02: let the poo lie. Organic can mean different things to different people. Although I am speaking as both a chemist and an organic gardener. (Yep. Before grad school, I used to teach organic gardening to kids in the summer. I also did soil science research as an undergrad, so I’ve got a lot of views of the issue.) So maybe it’s easy for me to see both sides. </p>
<p>Although this is what does piss me off: the use of the word ‘organic’ when it’s not government approved, or even reasonable. For example, those dry cleaners who put signs up in their windows touting their ‘Organic Practices!’ Or this <a href="http://www.npr.org/blogs/health/2011/07/13/137796144/organic-water-a-new-marketing-wave">organic water crap</a>. This is just preying on people’s ignorance about the subject to make a buck. Or as it’s otherwise known in the modern world, “marketing.” </p>
<p>Unfortunately, it seems the only way that people can avoid being duped by this is by education: being aware what organic means, when it is applicable, and if it actually has any benefit. And the jury’s sure out on that last one.</p>
<p>Oh, organic. What an obstreperous obstacle you are.</p>
<p><a href="http://ljkboerner.files.wordpress.com/2011/07/coneflowers.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/07/coneflowers.jpg?w=300&#038;h=199" alt="" title="coneflowers" width="300" height="199" class="aligncenter size-medium wp-image-505" /></a></p>
<p><em>Photo sources: <a href="http://www.flickr.com/photos/31064702@N05/4890195977/">chipmunk</a>, <a href="http://www.flickr.com/photos/ragesoss/83980370/">cat</a>. The other pictures are mine, that I took in my garden. So no stealing.<br />
</em></p>
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			<media:title type="html">Leigh Krietsch Boerner</media:title>
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			<media:title type="html">an organic chipmunk digging some organic vittles</media:title>
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			<media:title type="html">tomatoes in mah garden</media:title>
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			<media:title type="html">organic cat by ragesoss</media:title>
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		<title>Plagiarism—is it ever okay? No, really.</title>
		<link>http://ljkboerner.wordpress.com/2011/05/31/plagiarism%e2%80%94is-it-ever-okay-no-really/</link>
		<comments>http://ljkboerner.wordpress.com/2011/05/31/plagiarism%e2%80%94is-it-ever-okay-no-really/#comments</comments>
		<pubDate>Tue, 31 May 2011 17:14:30 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[research]]></category>
		<category><![CDATA[science writing]]></category>

		<guid isPermaLink="false">http://ljkboerner.wordpress.com/?p=454</guid>
		<description><![CDATA[I&#8217;m writing my thesis. Therefore, I am temporarily non compos mentis. Sorry. Logic dictates that along with the crazy comes obsessive fixation. And the current one? Plagiarism. I&#8217;m trying desperately to avoid it, which isn&#8217;t as easy as it sounds. Because first of all, what exactly is it? Copying someone else’s words verbatim and claiming [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=454&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I&#8217;m writing my thesis. Therefore, I am temporarily <em><a href="http://www.thefreedictionary.com/non+compos+mentis">non compos mentis</a></em>. Sorry.</p>
<p>Logic dictates that along with the crazy comes obsessive fixation. And the current one? Plagiarism. I&#8217;m trying desperately to avoid it, which isn&#8217;t as easy as it sounds. Because first of all, what exactly is it?</p>
<p>Copying someone else’s words verbatim and claiming them as yours, okay that’s obvious. But how many words do you have to change before it becomes your own? For example, take this sentence, from from the onlineyest of online sources, <a href="http://www.huffingtonpost.com/">the Huffington Post</a>:</p>
<blockquote><p>
Separate from the inspector general&#8217;s power to ban, the FDA has resurrected something called the &#8220;Park Doctrine,&#8221; which makes it easier for prosecutors to bring criminal charges against an executive.</p></blockquote>
<p>So that&#8217;s from an AP story on the HuffPo site, <a href="http://www.huffingtonpost.com/2011/05/31/feds-target-execs-health-fraud_n_868924.html">In Shift, Feds Target Top Execs For Health Fraud By Ricardo Alonso-Zaldivar</a>. </p>
<p>Trying it verbatim, <a href="http://www.dustball.com/cs/plagiarism.checker/">dustball.com</a> and <a href="http://plagiarisma.net/">plagiarisma.net</a> (using yahoo) labeled it possible plagiarism. Yay, them. <a href="http://www.duplichecker.com/">Duplichecker </a>(using msn search) came up with a bunch of links that were similar, some of them the AP story, some not (like the Wikipedia page for Inspector General). So now let&#8217;s change things up a bit. How about&#8230;</p>
<blockquote><p>Distinct from the inspector general&#8217;s authority to prohibit, the FDA has revived something termed the &#8220;Park Doctrine,&#8221; that simplifies lawyers bringing  charges against senior business people.
</p></blockquote>
<p>What I did was just change a lot of the words for synonyms, and rearranged a bit. What do those free web checkers think? Again, duplichecker came up with a bunch of links, but this time none of them were the original AP article. It was likewise hunky-dorey with dustball.com, and called unique by plagiarisma.net.</p>
<p>But what do actual flesh and blood people think? Is my bastardization of the AP sentence plagiarism? Or not? Where&#8217;s that hazy line in the sand? How different does it have to be to be considered&#8230;different enough?</p>
<p>And why the hell am I asking?</p>
<p>As I mentioned above, I&#8217;m up to my armpits in thesis right now. And I&#8217;m finding myself in the situation of having to re-visit some topics, specifically ones I&#8217;ve recently written papers on. As such, how I worded intros, discussions, and conclusions is quite fresh in my mind. So fresh that I find myself writing them <em>exactly the same way</em> in my thesis. I&#8217;m trying to avoid it whenever I can, but sometimes still catching things that slip through. But I have a feeling I&#8217;ve been missing some.</p>
<p>To add to the confusion, I&#8217;ve been reading the theses of other people, from my lab or not, to see how they did things. And when I go back to some of their original sources, I&#8217;m finding some&#8230;remarkable similarities. Some in places where it&#8217;s probably not okay, and some in places where it might be.</p>
<p>But where are those places? When is self-plagiarism okay?</p>
<p>Of course I&#8217;ve already asked my adviser this. His response? &#8220;It depends.&#8221;</p>
<p>Helpful.</p>
<p>When pushed to his limit, he told me, &#8220;try not to do it too much.&#8221;</p>
<p>Sigh.</p>
<p>Look, I realize that I&#8217;m being neurotic about the whole thing and probably overthinking it to boot, but I&#8217;m trying to stay above board here. No, I don&#8217;t think I&#8217;m going to end up as a <a href="http://retractionwatch.wordpress.com/2011/05/26/retractions-we-haven%E2%80%99t-had-a-chance-to-cover-part-3-another-duplication-and-plagiarism-edition/">Retraction Watch post</a> or anything, but I do want to Do a Good Job. So where and when is self-plagiarism okay? Really.</p>
<p>In lieu of your opinion on the matter, you also may tell me to lighten up or take me out for a drink. All are welcome.</p>
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			<media:title type="html">Leigh Krietsch Boerner</media:title>
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		<title>Why take iodide for radiation poisoning?</title>
		<link>http://ljkboerner.wordpress.com/2011/03/12/why-give-iodide-for-radiation-poisoning/</link>
		<comments>http://ljkboerner.wordpress.com/2011/03/12/why-give-iodide-for-radiation-poisoning/#comments</comments>
		<pubDate>Sat, 12 Mar 2011 22:58:50 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[biology]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[energy]]></category>
		<category><![CDATA[things that might kill you]]></category>
		<category><![CDATA[Fukushima Daiichi nuclear plant]]></category>
		<category><![CDATA[iodine]]></category>
		<category><![CDATA[Japan earthquake]]></category>
		<category><![CDATA[nuclear chemistry]]></category>
		<category><![CDATA[nuclear power]]></category>
		<category><![CDATA[radiation poisoning]]></category>
		<category><![CDATA[radioactive decay]]></category>
		<category><![CDATA[thyroid]]></category>

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		<description><![CDATA[The picture above is an aerial view of the Fukushima Daiichi power plant. As we all know, it was knocked about in the huge earthquake that hit Japan yesterday morning. At the time of this writing, it seems like there was some radioactive material leakage at the Fukushima Daiichi power plant, but it may have [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=384&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.flickr.com/photos/digitalglobe-imagery/5519452784/" title="Earthquake and Tsunami damage-Dai Ichi Power Plant, Japan by DigitalGlobe-Imagery, on Flickr"><img src="http://farm6.static.flickr.com/5175/5519452784_61e54f3fe7.jpg" width="500" height="286" alt="Earthquake and Tsunami damage-Dai Ichi Power Plant, Japan" /></a></p>
<p>The picture above is an aerial view of the Fukushima Daiichi power plant. As we all know, it was <a href="http://www.google.com/crisisresponse/japanquake2011.html">knocked about</a> in the huge earthquake that hit Japan yesterday morning. At the time of this writing, it seems like there was <a href="http://www.tepco.co.jp/en/press/corp-com/release/11031224-e.html">some radioactive material leakage at the Fukushima Daiichi power plant</a>, but <a href="http://www.facebook.com/iaeaorg#!/notes/international-atomic-energy-agency-iaea/japan-earthquake-update-12-march-2011-2110-cet/201193423243785">it may have gone down</a>. <a href="http://www.nytimes.com/2011/03/13/science/13radiation.html?_r=1&amp;hp">There&#8217;s a lot of confusion about what&#8217;s going on</a>, not surprisingly. It does seem like authorities are <a href="http://www.facebook.com/iaeaorg#!/notes/international-atomic-energy-agency-iaea/latest-iaea-update-on-japan-earthquake-1340-cet-12-march-2011/201105606585900">handing out iodide tablets</a> as a precaution against radiation poisoning, however.</p>
<p>So why would taking extra iodide protect against radiation poisoning? To answer that, we need to take a pretty big step back.</p>
<p>Many nuclear reactors get their energy by smacking uranium-235 with a neutron, called <a href="http://hyperphysics.phy-astr.gsu.edu/hbase/nucene/fission.html#c2">fission</a>. And in a turn of events that is both crazy and amazing, a single act of fission can create more than 200 million times the energy of the neutron that kicked it off in the first place. I&#8217;m not going to go into why here, but it has to do with the famous <a href="http://hyperphysics.phy-astr.gsu.edu/hbase/relativ/releng.html#c1">Einstein equation</a>.</p>
<p>So when uranium-235 decays, it gets broken into a lot of smaller fragments. One of these is iodine-131. It&#8217;s also radioactive. Out of the most <a href="http://hyperphysics.phy-astr.gsu.edu/hbase/nucene/fisfrag.html">common fission products of uranium</a>, iodine is the only one that&#8217;s present naturally in our bodies. </p>
<p>There are actually fourteen major radioactive isotopes of iodine. The majority of them are not considered dangerous, because they have very long <a href="http://hyperphysics.phy-astr.gsu.edu/hbase/nuclear/halfli2.html">half-lives</a>. That&#8217;s the time it takes for half the radioactive material in the element to decay.</p>
<p>For example, iodine-129 has a half-life of 15.7 million years. So its decay might be something like this: </p>
<p>Blam!&#8230;wait an extremely long time&#8230;Blam!&#8230;wait an extremely long time&#8230;etc.</p>
<p>However, the half-life of iodine-131 is 8 days. So it may look something more like this:</p>
<p>Blamblamblamblamblamblamblamblamblamblamblamblamblamblamblam<br />
blamblamblamblamblamblamblamblamblamblamblamblamblamblamblam!</p>
<p>I&#8217;m simplifying here, but you get the general idea: iodine-131 has the potential to do a lot more damage to the body, because it gives off more radiation in a short period of time.</p>
<p>And where it&#8217;s going to do that damage is mostly in the thyroid.</p>
<p><a href="http://ljkboerner.files.wordpress.com/2011/03/thyroide.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/03/thyroide.jpg?w=300&#038;h=212" alt="" title="Thyroid" width="300" height="212" class="aligncenter size-medium wp-image-405" /></a></p>
<p>That little butterfly-looking thing in your neck is the only part of the body that can absorb iodine. It pulls it out of food and, along with the amino acid <a href="http://en.wikipedia.org/wiki/Tyrosine">tyrosine</a>, converts it into the hormones thyroxine (T<sub>4</sub>) and triiodothyronine (T<sub>3</sub>). </p>
<p>T<sub>3</sub> and T<sub>4</sub> go off into the blood stream and the rest of the body where they oversee the conversion of oxygen and calories to energy. Every single cell in the body relies on these hormones to regulate their metabolism.</p>
<p>So imagine if the iodine absorbed by the body were radioactive. That would be way, way bad.</p>
<div id="attachment_421" class="wp-caption aligncenter" style="width: 488px"><a href="http://ljkboerner.files.wordpress.com/2011/03/t3-and-t4.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/03/t3-and-t4.jpg?w=490" alt="" title="T3 and T4"   class="size-full wp-image-421" /></a><p class="wp-caption-text">Triiodothyronine and thyroxine: hot or not?</p></div>
<p>Iodine is pretty volatile (<a href="http://www.youtube.com/watch?v=0_LWBgeQrvk">in a very purple way</a>). So if a nuclear reactor were to leak, iodine-131 might be in the air. Which people might breathe in. Which could get into their thyroids. Which could cause radiation poisoning in the short term. In the long term, breathing radioactive iodine can cause thyroid cancer, especially in kids.</p>
<p>To minimize the damage, people who may be/have been exposed to radiation from a power plant can take iodide pills. These work by saturating the thyroid with nice, non-radioactive iodide. That way, if any radioactive iodine does come along, the body won&#8217;t absorb it&#8211;the thyroid can only absorb a finite amount of iodine at a time. </p>
<p>If people can get these pills 48 hours before or eight hours after radiation exposure, it can <a href="within 48 hours before or eight hours after radiation exposure from a nuclear reactor accident can significantly reduce thyroid uptake of 131I and decrease the risk of radiation-induced thyroid cancer ">reduce thyroid uptake of iodine-131 and decrease the risk of radiation-induced thyroid cancer</a>. </p>
<p>[ETA: I do want to point out that this will ONLY protect against internal iodine radiation poisoning. Not radiation from cesium-137 and strontium-90, extremely dangerous fission products of uranium-235.]</p>
<p>These pills contain about 100 milligrams of potassium iodide. You can overdose on iodine, although it takes several grams. But burning of the mouth, throat, and stomach, fever, nausea, vomiting, diarrhea, and/or a weak pulse may be preferable to getting cancer later. </p>
<p>This treatment was used in the the <a href="http://www.world-nuclear.org/info/chernobyl/inf07.html">1986 Chernobyl nuclear reactor accident</a>. There were fewer cases of childhood thyroid cancer in areas that had access to iodine tablets, compared to areas that didn&#8217;t, or got them too late (<a href="http://www.fda.gov/downloads/Drugs/GuidanceComplianceRegulatoryInformation/Guidances/ucm080542.pdf">pdf link</a>).</p>
<p>Hopefully, people near the Fukushima Daiichi power plant will have access to iodide pills, and be able to get the hell out of there. Radiation&#8217;s not something you want to mess around with, especially if you&#8217;re pregnant or a kid. </p>
<p>UPDATE: There are now rumors that one of the reactors has exploded. <a href="http://live.reuters.com/Event/Japan_earthquake2">Follow Reuters for breaking news</a>, and keep your fingers crossed.</p>
<p>Photo credit: <a href="http://www.flickr.com/photos/digitalglobe-imagery/5519452784/">Digital-Globe imagery</a>, <a href="http://commons.wikimedia.org/wiki/File:Thyroide.jpg">Wikimedia Commons</a>. </p>
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			<media:title type="html">Leigh Krietsch Boerner</media:title>
		</media:content>

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			<media:title type="html">Earthquake and Tsunami damage-Dai Ichi Power Plant, Japan</media:title>
		</media:content>

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		<title>So much to love</title>
		<link>http://ljkboerner.wordpress.com/2011/02/26/so-much-to-love/</link>
		<comments>http://ljkboerner.wordpress.com/2011/02/26/so-much-to-love/#comments</comments>
		<pubDate>Sat, 26 Feb 2011 17:06:38 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[chemistry]]></category>
		<category><![CDATA[goofiness]]></category>
		<category><![CDATA[beer is necessary at group meeting]]></category>
		<category><![CDATA[favorite things]]></category>
		<category><![CDATA[I love running columns no really]]></category>
		<category><![CDATA[tetraphenylporphyrin]]></category>

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		<description><![CDATA[So Chemjobber, the reigning potentate of goofy lists, sent out an edict yesterday to hear other people&#8217;s favorite things in chemistry. Here are some of mine: The lovely purple sparkliness of tetraphenylporphyrin Bantam ware Using that three-neck 3L flask that looks like a giant glass udder Running columns that would match the decor at a [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=334&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>So <a href="http://chemjobber.blogspot.com/">Chemjobber</a>, the reigning potentate of goofy lists, <a href="http://chemjobber.blogspot.com/2011/02/12-things-i-love-about-chemistry.html">sent out an edict yesterday</a> to hear other people&#8217;s favorite things in chemistry. Here are some of mine:</p>
<div id="attachment_338" class="wp-caption aligncenter" style="width: 235px"><a href="http://ljkboerner.files.wordpress.com/2011/02/tetratolylporphyrin.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/02/tetratolylporphyrin.jpg?w=225&#038;h=300" alt="" title="Tetraphenylporphyrin" width="225" height="300" class="size-medium wp-image-338" /></a><p class="wp-caption-text">Tetraphenylporphyrin crystals! Although honestly, I&#039;ve never made batch this small.</p></div>
<ol>
<li>The lovely purple sparkliness of tetraphenylporphyrin</li>
<li>Bantam ware</li>
<li>Using that three-neck 3L flask that looks like a giant glass udder</li>
<li>Running columns that would match the decor at a six year old girl&#8217;s birthday party (ie, fractions that are pink, purple, and orange)</li>
<li>Beer at group meetings</li>
<li>Short group meetings</li>
<li>When my husband picks me up so I don&#8217;t have to drive home from group meetings</li>
<li>Clean separation of compounds on only one prep TLC</li>
<li>Beautiful, clean 2-D NMR spectra</li>
<li>Fresh bottles of tetrakis(triphenylphosphine)palladium (0)</li>
</ol>
<p>Although, I think my most favorite thing about chemistry is having a finished thesis. Oh wait! Hang on! I don&#8217;t have that! I must be hallucinating again. Repeated banging one&#8217;s head on the wall will do that, I guess.</p>
<p>Check out some other contributions: <a href="http://amonkeywithatypewriter.blogspot.com/2011/02/few-of-my-favourite-things.html?spref=tw">The Boiling Point</a>, <a href="http://sciencegeist.net/http:/sciencegeist.net/a-few-of-our-favorite-chemical-things/">ScienceGeist</a>, <a href="http://wavefunction.fieldofscience.com/2011/02/few-of-my-favorite-chemical-things.html">Curious Wavefunction</a>, <a href="http://labmonkey4hire.blogspot.com/2011/02/few-of-my-favourite-chemical-things.html">LabMonkey4Hire</a>.</p>
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			<media:title type="html">Leigh Krietsch Boerner</media:title>
		</media:content>

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			<media:title type="html">Tetraphenylporphyrin</media:title>
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		<title>The persistence of Barry White</title>
		<link>http://ljkboerner.wordpress.com/2011/02/14/the-persistence-of-barry-white/</link>
		<comments>http://ljkboerner.wordpress.com/2011/02/14/the-persistence-of-barry-white/#comments</comments>
		<pubDate>Mon, 14 Feb 2011 11:49:15 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[biology]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[drugs]]></category>
		<category><![CDATA[Viagra]]></category>
		<category><![CDATA[Barry White]]></category>
		<category><![CDATA[boners]]></category>
		<category><![CDATA[CGMP]]></category>
		<category><![CDATA[chemistry of Viagra]]></category>
		<category><![CDATA[erectile dysfunction]]></category>
		<category><![CDATA[NO]]></category>
		<category><![CDATA[PDE 5]]></category>
		<category><![CDATA[Sildenafil]]></category>

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		<description><![CDATA[Isn’t it funny sometimes, when you start out trying to do one thing, and you end up doing another? A lot of science goes that way. The guy who invented post-it notes was supposedly trying to make a stronger adhesive. Teflon was supposed to be a refrigerant. And Viagra? Well, they were trying to make [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=291&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Isn’t it funny sometimes, when you start out trying to do one thing, and you end up doing another? </p>
<p>A lot of science goes that way. The guy who invented post-it notes was supposedly trying to make a stronger adhesive. Teflon was supposed to be a refrigerant. And <a href="http://www.viagra.com/index.aspx">Viagra</a>? Well, they were trying to make a drug to control blood pressure.</p>
<p>It makes sense if you think about it for a minute. <a href="http://www.americanheart.org/presenter.jhtml?identifier=4656">High blood pressure is a problem</a> because it increases pressure in the arteries (duh), which means your heart has to work harder to get the blood everywhere it needs to go. But if you took a drug that made your arteries wider, your heart wouldn&#8217;t have to push so hard, problem go bye-bye, yes? More or less. </p>
<p>All right, let’s talk about penises now. </p>
<div id="attachment_293" class="wp-caption aligncenter" style="width: 510px"><a href="http://ljkboerner.files.wordpress.com/2011/02/non-human_penises_iceland_phallological_museum.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/02/non-human_penises_iceland_phallological_museum.jpg?w=490" alt="" title="Non-human_penises_Iceland_Phallological_Museum"   class="size-full wp-image-293" /></a><p class="wp-caption-text">A selection of penises from the Iceland Phallological Museum. Yet another reason to visit Icleand. Photo by Wellington Gray.</p></div>
<p>A guy gets an erection because blood flows into his penis, then stays there. Most men with erectile dysfunction have a problem with their penises filling up with blood. The arteries don’t open up enough, not enough blood can get in, hence no stiffy.</p>
<p>The body regulates arteries widening and constricting, like it regulates pretty much everything else, by chemical cascades. In this particular case, the brain sends a signal through a nerve cell, which triggers the release of nitric oxide, or NO. This turns on an enzyme called guanylate cyclase, which starts making this stuff called cyclic guanosine monophospate, or cGMP for short.</p>
<p><code>
<p align="center"><a href="http://www.flickr.com/photos/64188044@N00/5444053856/" title="NO by chemgrrl, on Flickr"><img src="http://farm6.static.flickr.com/5214/5444053856_99717d11be.jpg" width="500" height="224" alt="NO" /></a></p>
<p></code></p>
<p>This cGMP is the Barry White in the equation here. It puts those arteries in the penis at ease, so then they relax and open up. Then, schwing! Blood can get in, dude can pitch a tent, and make some sweet sweet love.</p>
<p>Of course, it’s not great biologically to walk around with a constant boner, so there’s something else floating around to make the cGMP go away. It’s yet another enzyme called phosodiesterase, or PDE. There are a lot of different PDEs in our bodies, but the one that rules in the wanger is PDE 5.</p>
<p>PDE 5’s one job is to break down cGMP. No cGMP, no more blood flowing into the penis, and eventually, no more erection. So here’s the pretty cool part: Viagra works by throwing a wrench in PDE 5’s machinery. It&#8217;s also known as 5-[2-ethoxy-5-(4-methylpiperazin-1-ylsulfonyl)phenyl]-1- methyl-3-propyl-1,6-dihydro-7H-pyrazolo[4,3-d]pyrimidin-7-one. It looks like so:</p>
<div id="attachment_293" class="wp-caption aligncenter" style="width: 510px"><code>
<p align="center"><a href="http://www.flickr.com/photos/64188044@N00/5444120858/" title="chemical structure of Viagra by chemgrrl, on Flickr"><img src="http://farm6.static.flickr.com/5291/5444120858_e06f1c6dcd.jpg" width="500" height="232" alt="chemical structure of Viagra" /></a></p>
<p></code><p class="wp-caption-text">Generic structure for Viagra--the pills actually contain sildenafil citrate, which is slightly different than what I've shown here. That convert name to structure button on ChemDraw just made things a bit too easy for me.</p></div>
<p>And this is what cGMP looks like. See the resemblance?</p>
<div id="attachment_345" class="wp-caption aligncenter" style="width: 275px"><code>
<p align="center"><a href="http://www.flickr.com/photos/64188044@N00/5444125840/" title="cGMP by chemgrrl, on Flickr"><img src="http://farm6.static.flickr.com/5215/5444125840_deb99b2934.jpg" width="259" height="340" alt="cGMP" /></a></p>
<p></code><p class="wp-caption-text">Resemblance to the Viagra molecule. Not to Barry White. But you can kinda see him too if you squint just right.</p></div>
<p>So PDE 5 is an <a href="http://highered.mcgraw-hill.com/sites/0072495855/student_view0/chapter2/animation__how_enzymes_work.html">enzyme</a>, and those work by kind of a lock-in-key type way. A molecule of a certain shape fits into the enzyme, and then the enzyme does what it will with it. In this case, breaks some bonds so the molecule can’t do its job anymore.</p>
<p>But when is sees Viagra floating around in there, it gets confused. That bit in red there? It fits into PDE 5 exactly the same way that cGMP does. So when there’s a lot of Viagra around, the PDE 5 chews it up, instead of the cGMP. So then cGMP can build up in the penis, which makes sure the arteries are opened up. Barry White persists, and the guy gets a chub. Long live Barry White.</p>
<p>Viagra induced woodies can also last up to four hours. So for those of you who can&#8217;t get enough? You&#8217;re in luck.</p>
<p><object width="490" height="393"><param name="movie" value="http://www.youtube.com/e/casA8sX6u80"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/e/casA8sX6u80" type="application/x-shockwave-flash" width="490" height="393" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
<p>Happy Valentine&#8217;s Day.</p>
<p>~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<br />
For further reading (with diagrams!) I suggest Discovery Health&#8217;s <a href="http://health.howstuffworks.com/sexual-health/sexual-dysfunction/viagra1.htm">How Viagra Works page</a>. For the chemists in the crowd, the original paper by Pfizer is pretty interesting: Terrett et al., Bioorganic &amp; Medicinal Chemistry Letters, Vol. 6, No. 15, pp. 1819-1824, 1996.</p>
<p>Oh and btw: the <a href="http://www.phallus.is/">Icelandic Pallological Museum</a>. You&#8217;re welcome.</p>
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			<media:title type="html">Leigh Krietsch Boerner</media:title>
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			<media:title type="html">Non-human_penises_Iceland_Phallological_Museum</media:title>
		</media:content>

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			<media:title type="html">NO</media:title>
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			<media:title type="html">chemical structure of Viagra</media:title>
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			<media:title type="html">cGMP</media:title>
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		<item>
		<title>Chemistry: this shit&#8217;s important</title>
		<link>http://ljkboerner.wordpress.com/2011/01/24/chemistry-this-shits-important/</link>
		<comments>http://ljkboerner.wordpress.com/2011/01/24/chemistry-this-shits-important/#comments</comments>
		<pubDate>Mon, 24 Jan 2011 12:01:18 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[chemistry]]></category>
		<category><![CDATA[Haber-Bosch process]]></category>
		<category><![CDATA[things that will kill you]]></category>
		<category><![CDATA[agriculture]]></category>
		<category><![CDATA[eating]]></category>
		<category><![CDATA[humans]]></category>
		<category><![CDATA[science and society]]></category>
		<category><![CDATA[starvation]]></category>
		<category><![CDATA[world population]]></category>

		<guid isPermaLink="false">http://ljkboerner.wordpress.com/?p=184</guid>
		<description><![CDATA[What&#8217;s the most important scientific discovery ever? I put this question up on facebook, and people came up with some pretty good answers. Electricity was the most popular. Fermentation and antibiotics were also good suggestions. But when you think it in terms of having a direct impact on the largest amount of people, there&#8217;s really [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=184&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>What&#8217;s the most important scientific discovery ever?</p>
<p>I put this question up on facebook, and people came up with some pretty good answers. Electricity was the most popular. Fermentation and antibiotics were also good suggestions. But when you think it in terms of having a direct impact on the largest amount of people, there&#8217;s really only one answer: the Haber-Bosch process.</p>
<p>Yeah, I know. You&#8217;ve never heard of it. But you may be alive because of it.</p>
<p>The <a href="http://www.ausetute.com.au/haberpro.html">Haber-Bosch process</a> is how you make ammonia out of nitrogen and hydrogen gasses. I&#8217;m simplifying it a wee bit, but here&#8217;s how it works:</p>
<p>You take your hydrogen and nitrogen,</p>
<div id="attachment_202" class="wp-caption aligncenter" style="width: 510px"><code>
<p align="center"><a href="http://www.flickr.com/photos/64188044@N00/5380174960/" title="HB before by chemgrrl, on Flickr"><img src="http://farm6.static.flickr.com/5205/5380174960_deccae7d54.jpg" width="500" height="334" alt="HB before" /></a></p>
<p></code><p class="wp-caption-text">Figure 1. Nitrogen and hydrogen gasses. Blue = nitrogen, red = hydrogen</p></div>
<p>squish the crap out of them and make them really really hot,</p>
<div id="attachment_202" class="wp-caption aligncenter" style="width: 510px"><code>
<p align="center"><a href="http://www.flickr.com/photos/64188044@N00/5380148452/" title="HB during by chemgrrl, on Flickr"><img src="http://farm6.static.flickr.com/5008/5380148452_2b2ce0776c.jpg" width="415" height="500" alt="HB during" /></a></p>
<p></code><p class="wp-caption-text">Figure 2. An approximation of the Haber-Bosch process. Please note that squish = approximately 250 times the pressure of the normal atmosphere at sea level, and way hot = anywhere from about 900 to 1600 degrees F. Maybe I should have said way way hot.</p></div>
<p>and poof! You have ammonia!</p>
<div id="attachment_202" class="wp-caption aligncenter" style="width: 510px"><code>
<p align="center"><a href="http://www.flickr.com/photos/64188044@N00/5380142732/" title="HB after by chemgrrl, on Flickr"><img src="http://farm6.static.flickr.com/5245/5380142732_7f8a11ac18.jpg" width="500" height="210" alt="HB after" /></a></p>
<p></code><p class="wp-caption-text">Figure 3. Ammonia (NH<sub>3</sub>) is a happy molecule. Please note the the happiness factor of each molecules has been approximated using standardized procedures published elsewhere.</p></div>
<p>The thing about this process&#8211;chemists had been trying to do this for more than 100 years when Fritz Haber figured it out in 1909. As living things, nitrogen&#8217;s pretty important to us. Our bodies are about three percent nitrogen by weight, and we get it from eating plants and other animals. But plants, having no mouths (for the most part), have to get it either from the air or the soil. The problem is that even though N<sub>2</sub> (the nitrogen molecule, Fig. 1) makes up almost 80% of the air we breathe, it doesn’t react with anything. That triple bond you see up there is quite strong, and it takes a lot of energy to pull it apart, more than plants generally have at their disposal. So plants can’t break it down<sup>1</sup> and recycle it into things like amino acids and cell walls and all that useful stuff. For it to be usable, nitrogen has to be “fixed.”</p>
<p>Ammonia, NH<sub>3</sub> (Fig. 3), is a fixed form of nitrogen. That means that its bonds are breakable, and it can react with other things. Generally, it’s used to make nitrates, NO<sub>3</sub>, which is used for both explosives and fertilizer. Natural forms of fixed nitrogen are rare, but it’s found in bat and bird poo, and <a href="http://en.wikipedia.org/wiki/Saltpeter">saltpeter</a>. These things were some seriously in demand fertilizers before the Haber-Bosch process was discovered. In fact, <a href="http://hubpages.com/hub/The_Guano_Islands_Act_of_1856_Congress_Bird_Poop_Law">The Guano Islands Act of 1856</a> was passed so people could claim any uninhabited, poop-covered island they found as a US protectorate. Wars were fought over poo. Really. So when Haber found a way to finally make fixed nitrogen, it was quite a big deal. </p>
<p><div id="attachment_202" class="wp-caption aligncenter" style="width: 510px"><code>
<p align="center"><a href="http://www.flickr.com/photos/64188044@N00/5381399479/" title="bird poo by chemgrrl, on Flickr"><img src="http://farm6.static.flickr.com/5210/5381399479_5432ccbe4a.jpg" width="500" height="246" alt="bird poo" /></a></p>
<p></code><p class="wp-caption-text">Figure 4. Americans get the poo. The Guano Islands Act of 1856 is allegedly still on the books. Get your flag and go! (With apologies to Eddie Izzard.)</p></div><br />
Then Carl Bosch and Alwin Mittasch came along and figured out how to make Haber’s system workable on an industrial scale. Haber had originally used an osmium catalyst to make ammonia, but <a href="http://periodic.lanl.gov/elements/76.html">that’s pretty expensive</a>. Mittasch went through about 4000 other catalysts until he found one that worked as well—a mixture of iron and metal oxides. The Haber-Bosch process was officially rolled out in the industrial world in 1913. <a href="http://nobelprize.org/nobel_prizes/chemistry/laureates/1918/haber-bio.html">Haber won the Nobel Prize</a> for it in 1918. <a href="http://nobelprize.org/nobel_prizes/chemistry/laureates/1931/bosch-bio.html#">Bosch shared the prize</a> with Friedrich Bergius in 1931 for figuring out how to deal with high-pressure chemistry.</p>
<p>So this was a great chemical breakthrough and all that, but the really important thing? A lot of people stopped starving to death.</p>
<div id="attachment_202" class="wp-caption aligncenter" style="width: 510px"><a href="http://ljkboerner.files.wordpress.com/2011/01/ngeo325-f1.jpg"><img src="http://ljkboerner.files.wordpress.com/2011/01/ngeo325-f1.jpg?w=490" alt="" title="ngeo325-f1"   class="aligncenter size-full wp-image-229" /></a><p class="wp-caption-text"> Figure 5. Effect of the Haber-Bosch process on world population. Graph from Erisman, J. W.; Sutton, M. A.; Galloway, J.; Klimont, Z.; Winiwarter, W. “How a Century of Ammonia Synthesis Changed the World”. Nat. Geosci. 2008, 1: 636-630.</p></div>
<p>The above graph shows how the world&#8217;s population changed after we got cheap, available fertilizer. Look at the difference between the solid black line and the dashed red line. According to this chart, about 3 billion people are alive today because of this. Because of one chemical reaction.</p>
<p>The Haber-Bosch process is used to make about 500 million tons of artificial fertilizer per year, and sustains about 40% of the population. It uses about ONE PERCENT of the world&#8217;s total energy supply<sup>2</sup>. If the population continues to grow as expected, then by 2050, about 270 million tons of coal (or equivalent energy) will be needed to make enough fertilizer to keep us all from starving to death.<sup>3</sup></p>
<p>One chemical reaction.</p>
<p>On the flip side, nitrogen runoff from fertilizer is choking lakes and rivers with algae and messing up the ecosystem. Keeping the Haber-Bosch reaction running is filling the air with carbon dioxide, carbon monoxide, and other combustion byproducts that are changing the climate. I&#8217;m not even going to go into the potential impact of a <a href="http://www.census.gov/main/www/popclock.html">hugegrowingwayfast population</a>. (Tangentially, Haber&#8217;s discovery also kept the Germans in explosives during World War I. He&#8217;s known as the father of chemical warfare, and his work led to the use of Zyklon B in Nazi death camps.<a href="http://www.amazon.com/Alchemy-Air-Jewish-Scientific-Discovery/dp/0307351785">The Alchemy of Air</a> is a fascinating book about the whole history. The writing is a bit dry, but I still highly recommend.)</p>
<p>Even taking these things into account, it cannot be argued that the Haber-Bosch process has had an ungodly huge impact on all of our lives. Go ahead, try to deny it. Try with both hands. </p>
<p>This year is the <a href="http://www.chemistry2011.org/">International Year of Chemistry</a>, &#8220;celebrating the achievements of chemistry and its contributions to the well-being of mankind.&#8221; And believe it or not, there are a lot of them. Way too many to mention. Way too many for us to even know about.</p>
<p>Chemistry: this shit&#8217;s important.</p>
<p>&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;&#8230;</p>
<p><em>For more reading on the Haber-Bosch process, I suggest of The Alchemy of Air, <a href="http://biochembelle.wordpress.com/2011/01/22/shadows-of-greatness/">In the shadows of greatness</a>, <a href="http://www.idsia.ch/~juergen/haberbosch.html">Jürgen Schmidhuber&#8217;s page on Haber and Bosch</a>, and <a href="http://hubpages.com/hub/World-Population-Growth">World Population: How Did It Get So Big?</a><br />
</em><br />
<sup>1</sup><em>Legumes (eg beans or peanuts) have bacteria at the base of their roots called rhizobia that can pull nitrogen out of the air. They&#8217;re the only kind of plants that do this, and that&#8217;s why you&#8217;ll often see soybeans as a rotator crop with corn. Beans put nitrogen in the soil, and corn pulls quite a bit of it out.</em></p>
<p><sup>2</sup><em>Science 297(1654), Sep 2002.</em></p>
<p><sup>3</sup><em>Biological Nitrogen Fixation &#8211; National Research Council . National Academic Press 1994.</em></p>
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			<media:title type="html">Leigh Krietsch Boerner</media:title>
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			<media:title type="html">HB before</media:title>
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			<media:title type="html">bird poo</media:title>
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		<title>Pushing electrons (or not)</title>
		<link>http://ljkboerner.wordpress.com/2010/06/09/pushing-electrons-or-not/</link>
		<comments>http://ljkboerner.wordpress.com/2010/06/09/pushing-electrons-or-not/#comments</comments>
		<pubDate>Wed, 09 Jun 2010 16:51:29 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[chemistry]]></category>
		<category><![CDATA[science writing]]></category>

		<guid isPermaLink="false">http://ljkboerner.wordpress.com/?p=176</guid>
		<description><![CDATA[Dear two people who subscribe to this blog, In case you&#8217;re interested, I&#8217;m blogging about alternative careers in chemistry over at Just Another Electron Pusher, a C&#38;ENews blog. So yay for that. Toodles.<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=176&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Dear two people who subscribe to this blog,</p>
<p>In case you&#8217;re interested, I&#8217;m blogging about alternative careers in chemistry over at <a href="http://cenblog.org/just-another-electron-pusher/">Just Another Electron Pusher</a>, a C&amp;ENews blog. </p>
<p>So yay for that.</p>
<p>Toodles.</p>
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		<title>Back door to HeLa review finally up</title>
		<link>http://ljkboerner.wordpress.com/2010/04/07/back-door-to-hela-review-finally-up/</link>
		<comments>http://ljkboerner.wordpress.com/2010/04/07/back-door-to-hela-review-finally-up/#comments</comments>
		<pubDate>Wed, 07 Apr 2010 20:26:02 +0000</pubDate>
		<dc:creator>Leigh Krietsch Boerner</dc:creator>
				<category><![CDATA[blathering]]></category>
		<category><![CDATA[books]]></category>

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		<description><![CDATA[People without a subscription to Science can see my review of Rebecca Skloot&#8217;s The Immortal Life of Henrietta Lacks for free now. Go to myClips page and click on the first link. Should work. Generally, Science is very nice and gives a free back door to the author so they can tell all their friends [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ljkboerner.wordpress.com&amp;blog=6158892&amp;post=145&amp;subd=ljkboerner&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>People without a subscription to Science can see my review of Rebecca Skloot&#8217;s <em>The Immortal Life of Henrietta Lacks</em> for free now. Go to my<a href="http://ljkboerner.wordpress.com/clips/">Clips page</a> and click on the first link. Should work.</p>
<p>Generally, Science is very nice and gives a free back door to the author so they can tell all their friends and they can go read with lots of happiness and flowers and no monies. The review was published back in February. It took this long to get the free link up just because I am an idiot, and only realized this morning that I had sent the request to the wrong person. Is all fixed now.</p>
<p>For all of you dying to read the review, yet not willing to shell out the dollars, I apologize.</p>
<p>ETA: I guess it&#8217;s NOT working after all. I&#8217;m trying to fix it, so sit tight.<br />
ETA2: Science insists there&#8217;s nothing wrong on their end. So&#8230;yeah. Don&#8217;t really know what to say there.</p>
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